The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1543
Genome IDAE008384
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina mazei Go1 [AE008384]
Start position on genome 2027573
End posion on genome 2027496
Amino Acid Pro
Anticodon GGG
Upstream region at tRNA start position 
tctgctctgc
tRNA gene sequence 
GGGGCCGTAGGGTAGCTTGGTCCATCCTGCAAGACTGGGGGTCTTGCGACTTGAGTTCGA
ATCTCAACGGCCCCACCA
Downstream region at tRNA end position 
gaatcacatt
Secondary structure (Cloverleaf model)
>At1543	Pro	GGG
                   c      ACCA gaatcacatt
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     A A C T C     A
    T C G A        A      | | | | |     G
  T         T G G G       T T G A G     C
  G           | | +                 T T
  G         T C C T
    T C C A        G     CGAC
                    C - G
                    A - T
                    A - T
                    G - C
                    A - T
                  C       G
                  T       G
                    G G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTAGGGTAGCTTGGTCCATCCTGCAAGACTGGGGGTCTTGCGACTTGAGTTCGA
ATCTCAACGGCCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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