The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1548
Genome IDAE008384
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina mazei Go1 [AE008384]
Start position on genome 3101418
End posion on genome 3101347
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
tatacaggct
tRNA gene sequence 
GCCAAGGTGGCGGAGCGGTCACGCAATCGCCAGCAGAGCGATTCAGTCCTGGTTCAAATC
CGGACCTTGGCTtct
Downstream region at tRNA end position 
ttaaattttt
Secondary structure (Cloverleaf model)
>At1548	Cys	GCA
                   t      Ttct ttaaattttt
                     G - C
                     C - G
                     C - G
                     A - T
                     A - T
                     G - C
                     G - C          T A
                    T     A G G C C     A
        G A        G        | + | |     A
      C     G G C G       C C T G G     C
      G       | | |                 T T
      G     A C G C
        T C        A     TCAGT
                    A - T
                    T - A
                    C - G
                    G - C
                    C - G
                  C       A
                  A       G
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCAAGGTGGCGGAGCGGTCACGCAATCGCCAGCAGAGCGATTCAGTCCTGGTTCAAATC
CGGACCTTGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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