The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1552
Genome IDAE008384
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina mazei Go1 [AE008384]
Start position on genome 3631276
End posion on genome 3631183
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
gcggcaccgc
tRNA gene sequence 
GGGCTCGTGGGGTAGCCAGGATATCCTAATGGGCTTCGAACCCATTGACTCGTGTTCGAA
TCGCGGCGGGCCCGtta
Downstream region at tRNA end position 
acctgtttta
Secondary structure (Cloverleaf model)
>At1552	Arg	TCG
                   c      Gtta acctgtttta
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     C - G
                     G - C          T A
                    T     G G C G C     A
    C C G A        G      + | | + |     G
  A         T G G G       T C G T G     C
  G           | | +                 T T
  G         T C C T
    A T A          A     TGAC
                    A - T
                    T - A
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A *
                    T C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTCGTGGGGTAGCCAGGATATCCTAATGGGCTTCGAagtaagattcttacgaagacA
CCCATTGACTCGTGTTCGAATCGCGGCGGGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK