The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1554
Genome IDCP000102
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosphaera stadtmanae DSM 3091 [CP000102]
Start position on genome 138233
End posion on genome 138303
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
ttttgttttt
tRNA gene sequence 
GCCAAGGTTACCGAGTGGCTAGGTGTGTGGCTGCAGACCATAATACTTGGGTTCAAATCC
CAACCTTGGCTttt
Downstream region at tRNA end position 
attataaatt
Secondary structure (Cloverleaf model)
>At1554	Cys	GCA
                   t      Tttt attataaatt
                     G - C
                     C - G
                     C - G
                     A - T
                     A - T
                     G - C
                     G - C          T A
                    T     A A C C C     A
        G A        T      | | | | |     A
      T     G C C A       T T G G G     C
      G       | | |                 T T
      G     A G G T
        C T        G     ATAC
                    T - A
                    G + T
                    T - A
                    G - C
                    G - C
                  C       A
                  T       G
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCAAGGTTACCGAGTGGCTAGGTGTGTGGCTGCAGACCATAATACTTGGGTTCAAATCC
CAACCTTGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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