The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1555
Genome IDCP000102
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosphaera stadtmanae DSM 3091 [CP000102]
Start position on genome 215313
End posion on genome 215384
Amino Acid Arg
Anticodon GCG
Upstream region at tRNA start position 
tttttcatat
tRNA gene sequence 
GCCTTGATAGTGTAGCGGATATCACGAGGGACTGCGGATCCCTTTACCCGAGTTCAAATC
TCGGTCAGGGCGctt
Downstream region at tRNA end position 
tcaatattta
Secondary structure (Cloverleaf model)
>At1555	Arg	GCG
                   t      Gctt tcaatattta
                     G - C
                     C - G
                     C - G
                     T + G
                     T - A
                     G - C
                     A - T          T A
                    T     G G C T C     A
      C G A        A      | | | | |     A
    G       T G T G       C C G A G     C
    G         | | |                 T T
    A       T C A C
      T A          G     TTAC
                    A - T
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCTTGATAGTGTAGCGGATATCACGAGGGACTGCGGATCCCTTTACCCGAGTTCAAATC
TCGGTCAGGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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