The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1557
Genome IDCP000102
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosphaera stadtmanae DSM 3091 [CP000102]
Start position on genome 336965
End posion on genome 337037
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position 
tttgtcatgt
tRNA gene sequence 
GCCGTCGTGGCTCAGTAGGTAGAGCGTTCGGCTGTTAACCGATTGGTCACAGGTTCAAGT
CCTGTCGACGGCGcta
Downstream region at tRNA end position 
taattctttt
Secondary structure (Cloverleaf model)
>At1557	Asn	GTT
                   t      Gcta taattctttt
                     G - C
                     C - G
                     C - G
                     G - C
                     T - A
                     C - G
                     G - C          T G
                    T     T G T C C     A
      T G A        G      | | | | |     A
    A       C T C G       A C A G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     TGGTC
                    T   T
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGTCGTGGCTCAGTAGGTAGAGCGTTCGGCTGTTAACCGATTGGTCACAGGTTCAAGT
CCTGTCGACGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK