The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1559
Genome IDCP000102
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosphaera stadtmanae DSM 3091 [CP000102]
Start position on genome 337144
End posion on genome 337218
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
tataaatttt
tRNA gene sequence 
GCTCCGATAGTGTAGTCCGGCCAATCATTTCGGCCTTTCGAGCCGAAGACTCGGGTTCGA
ATCCCGGTCGGAGCAttt
Downstream region at tRNA end position 
tctagaacct
Secondary structure (Cloverleaf model)
>At1559	Glu	TTC
                   t      Attt tctagaacct
                     G - C
                     C - G
                     T - A
                     C - G
                     C - G
                     G - C
                     A - T          T A
                    T     G G C C C     A
    C T G A        A      + | | | |     G
  C         T G T G       T C G G G     C
  G           | | +                 T T
  G         T C A T
    C C A A        T     AGAC
                    T - A
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTCCGATAGTGTAGTCCGGCCAATCATTTCGGCCTTTCGAGCCGAAGACTCGGGTTCGA
ATCCCGGTCGGAGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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