The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1560
Genome IDCP000102
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosphaera stadtmanae DSM 3091 [CP000102]
Start position on genome 337323
End posion on genome 337406
Amino Acid Leu
Anticodon TAG
Upstream region at tRNA start position
tattttatat
tRNA gene sequence
GCGGGGGTGCCCGAGCTGGCCAAAGGGGACAGGCTTAGGACCTGTTGGCGTAGGCCTCCC
AGGGTTCGAATCCCTGCTCCCGCActt
Downstream region at tRNA end position
tagataaggg
Secondary structure (Cloverleaf model)
>At1560	Leu	TAG
                   t      Actt tagataaggg
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G + T
                     G - C          T A
                    T     G T C C C     A
    T C G A        G      | | | | |     G
  G         G C C C       C A G G G     C
  G           | | |                 T T
  C         A G G G
    C A A          G     TGGCGTAGGCCTCC
                    A - T
                    C - G
                    A - T
                    G - C
                    G - C
                  C       A
                  T       G
                    T A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTGCCCGAGCTGGCCAAAGGGGACAGGCTTAGGACCTGTTGGCGTAGGCCTCCC
AGGGTTCGAATCCCTGCTCCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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