The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1561
Genome IDCP000102
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosphaera stadtmanae DSM 3091 [CP000102]
Start position on genome 337442
End posion on genome 337516
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position 
gtttttaaat
tRNA gene sequence 
GCCGGGGTAGGATAGTGGTTATTCTTCGGGACTGTGGATCCCGTGACTCGGGTTCGATTC
TCGGCCCCGGCCCCA
Downstream region at tRNA end position 
tttaaaaaaa
Secondary structure (Cloverleaf model)
>At1561	His	GTG
                   t      CCCA tttaaaaaaa
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T T
                    T     G G C T C     A
      T G A        A      + | | + |     G
    G       T A G G       T C G G G     C
    G         | | +                 T T
    T       T T C T
      T A          T     TGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTAGGATAGTGGTTATTCTTCGGGACTGTGGATCCCGTGACTCGGGTTCGATTC
TCGGCCCCGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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