The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1565
Genome IDCP000102
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosphaera stadtmanae DSM 3091 [CP000102]
Start position on genome 602745
End posion on genome 602828
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
ttttatgtat
tRNA gene sequence 
GTCGAGGTGGCCCAGCCTGGTACGGCGGTGGCCTGCTAAGCCACTGGACAGATGTCCACC
CGGGTTCGAATCCCGGCCTCGGCGctt
Downstream region at tRNA end position 
aattaatttt
Secondary structure (Cloverleaf model)
>At1565	Ser	GCT
                   t      Gctt aattaatttt
                     G - C
                     T + G
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        G      | | | | |     G
    C       C C C G       C C G G G     C
    T         | | |                 T T
    G       C G G C
      G T A        G     TGGACAGATGTCCAC
                    G - C
                    T - A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    G C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GTCGAGGTGGCCCAGCCTGGTACGGCGGTGGCCTGCTAAGCCACTGGACAGATGTCCACC
CGGGTTCGAATCCCGGCCTCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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