The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1566
Genome IDCP000102
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosphaera stadtmanae DSM 3091 [CP000102]
Start position on genome 669039
End posion on genome 669112
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
attttttttt
tRNA gene sequence 
GCCTTGATGGCTCAGCAAGGAACAGTACCTGACTCGTAATCAGGGGATCGGGGGTTCAAA
TCCCCCTCAGGGCTtat
Downstream region at tRNA end position 
aaactttttt
Secondary structure (Cloverleaf model)
>At1566	Thr	CGT
                   t      Ttat aaactttttt
                     G - C
                     C - G
                     C - G
                     T + G
                     T - A
                     G - C
                     A - T          T A
                    T     C C C C C     A
      C G A        G      | | | | |     A
    A       C T C G       G G G G G     C
    A         | | +                 T T
    G       C A G T
      G A A        A     GGATC
                    C - G
                    C - G
                    T - A
                    G - C
                    A - T
                  C       A
                  T       A
                    C G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCTTGATGGCTCAGCAAGGAACAGTACCTGACTCGTAATCAGGGGATCGGGGGTTCAAA
TCCCCCTCAGGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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