The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1568
Genome IDCP000102
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosphaera stadtmanae DSM 3091 [CP000102]
Start position on genome 866000
End posion on genome 866072
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position 
tagtatatat
tRNA gene sequence 
GCCGTCGTGGCTCAGTAGGTAGAGCGTTCGGCTGTTAACCGATTGGTCACAGGTTCAAGT
CCTGTCGACGGCGcta
Downstream region at tRNA end position 
acaattcttt
Secondary structure (Cloverleaf model)
>At1568	Asn	GTT
                   t      Gcta acaattcttt
                     G - C
                     C - G
                     C - G
                     G - C
                     T - A
                     C - G
                     G - C          T G
                    T     T G T C C     A
      T G A        G      | | | | |     A
    A       C T C G       A C A G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     TGGTC
                    T   T
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGTCGTGGCTCAGTAGGTAGAGCGTTCGGCTGTTAACCGATTGGTCACAGGTTCAAGT
CCTGTCGACGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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