The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1569
Genome IDCP000102
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosphaera stadtmanae DSM 3091 [CP000102]
Start position on genome 1206340
End posion on genome 1206414
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
tgattagtaa
tRNA gene sequence 
GGGCGCGTGGCTCAGCTTGGTTAGCGCGCACGGCTGATAACCGTGAGGTCATGGGTTCGA
ATCCCATCGTGCCCActt
Downstream region at tRNA end position 
tataaactat
Secondary structure (Cloverleaf model)
>At1569	Ile	GAT
                   a      Actt tataaactat
                     G - C
                     G - C
                     G - C
                     C - G
                     G + T
                     C - G
                     G - C          T A
                    T     T A C C C     A
    T C G A        G      | | | | |     G
  T         C T C G       A T G G G     C
  G         |   | |                 T T
  G         G C G C
    T T A          G     AGGTC
                    C - G
                    A - T
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCGCGTGGCTCAGCTTGGTTAGCGCGCACGGCTGATAACCGTGAGGTCATGGGTTCGA
ATCCCATCGTGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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