The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1571
Genome IDCP000102
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosphaera stadtmanae DSM 3091 [CP000102]
Start position on genome 1303562
End posion on genome 1303633
Amino Acid Gln
Anticodon TTG
Upstream region at tRNA start position 
agtataacat
tRNA gene sequence 
AGTCCCGTAGGGTAGTGGCAATCCTCCTGGTCTTTGGAACCGGGGACAGCGGTTCGACTC
CGCTCGGGACTActa
Downstream region at tRNA end position 
ttatatctaa
Secondary structure (Cloverleaf model)
>At1571	Gln	TTG
                   t      Acta ttatatctaa
                     A - T
                     G - C
                     T - A
                     C - G
                     C - G
                     C - G
                     G - C          T C
                    T     T C G C C     A
      T G A        A      | | | | |     G
    G       T G G G       A G C G G     C
    G         | | +                 T T
    C       T C C T
      A A          C     GGAC
                    C - G
                    T + G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       G
                    T T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGTCCCGTAGGGTAGTGGCAATCCTCCTGGTCTTTGGAACCGGGGACAGCGGTTCGACTC
CGCTCGGGACTA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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