The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1573
Genome IDCP000102
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosphaera stadtmanae DSM 3091 [CP000102]
Start position on genome 1391385
End posion on genome 1391458
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
tctttcatat
tRNA gene sequence 
GCGGTTGTAGTCTAGTCTGGCTAGGACTTGGGCCTTCCAAGCCTACGACCCGGGTTCAAA
TCCCGGCAGCCGCActa
Downstream region at tRNA end position 
tacttttaaa
Secondary structure (Cloverleaf model)
>At1573	Gly	TCC
                   t      Acta tacttttaaa
                     G - C
                     C - G
                     G - C
                     G - C
                     T + G
                     T - A
                     G - C          T A
                    T     G G C C C     A
    C T G A        A      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | |                 T T
  G         G G A C
    C T A          T     CGAC
                    T - A
                    G + T
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGTTGTAGTCTAGTCTGGCTAGGACTTGGGCCTTCCAAGCCTACGACCCGGGTTCAAA
TCCCGGCAGCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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