The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1576
Genome IDCP000102
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosphaera stadtmanae DSM 3091 [CP000102]
Start position on genome 1757158
End posion on genome 1757233
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
tgttaaagat
tRNA gene sequence 
GGGCTCATAGTCTAGCCAGGATTATGACGTGGGACTTCGGATCCCAAGATCGGGGGTTCA
AATCCCCCTGGGCTCGtta
Downstream region at tRNA end position 
tttataatct
Secondary structure (Cloverleaf model)
>At1576	Arg	TCG
                   t      Gtta tttataatct
                     G - C
                     G + T
                     G - C
                     C - G
                     T + G
                     C - G
                     A - T          T A
                    T     C C C C C     A
    C C G A        A      | | | | |     A
  A         T C T G       G G G G G     C
  G           | | |                 T T
  G         T G A C
    A T T A        G     AGATC
                    T - A
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTCATAGTCTAGCCAGGATTATGACGTGGGACTTCGGATCCCAAGATCGGGGGTTCA
AATCCCCCTGGGCTCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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