The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1578
Genome IDCP000102
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosphaera stadtmanae DSM 3091 [CP000102]
Start position on genome 407502
End posion on genome 407431
Amino Acid Thr
Anticodon GGT
Upstream region at tRNA start position 
aaatttaatt
tRNA gene sequence 
GCCTTAGTGGCTCAGGGGTAGAGCGATGCCTTGGTAAGGCATAGGTCGAGGGTTCAATTC
CCCCCTAAGGCTtat
Downstream region at tRNA end position 
atttatctga
Secondary structure (Cloverleaf model)
>At1578	Thr	GGT
                   t      Ttat atttatctga
                     G - C
                     C - G
                     C - G
                     T - A
                     T - A
                     A - T
                     G - C          T T
                    T     C C C C C     A
        G A        G      |   | | |     A
      G     C T C G       G A G G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     AGGTC
                    A - T
                    T - A
                    G - C
                    C - G
                    C - G
                  T       A
                  T       A
                    G G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCTTAGTGGCTCAGGGGTAGAGCGATGCCTTGGTAAGGCATAGGTCGAGGGTTCAATTC
CCCCCTAAGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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