The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1579
Genome IDCP000102
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosphaera stadtmanae DSM 3091 [CP000102]
Start position on genome 407617
End posion on genome 407534
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
atttttatat
tRNA gene sequence 
GCAGGGGTGCCCGAGCTGGCCAAAGGGGGTGGACTTAAGATCCTCTGGCGTAGGCCTACG
TGGGTTCAAATCCCATCTCCTGCActt
Downstream region at tRNA end position 
tataataaac
Secondary structure (Cloverleaf model)
>At1579	Leu	TAA
                   t      Actt tataataaac
                     G - C
                     C - G
                     A - T
                     G - C
                     G - C
                     G + T
                     G - C          T A
                    T     T A C C C     A
    T C G A        G      + | | | |     A
  G         G C C C       G T G G G     C
  G           | | |                 T T
  C         A G G G
    C A A          G     TGGCGTAGGCCTAC
                    G - C
                    T   T
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCAGGGGTGCCCGAGCTGGCCAAAGGGGGTGGACTTAAGATCCTCTGGCGTAGGCCTACG
TGGGTTCAAATCCCATCTCCTGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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