The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1581
Genome IDCP000102
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosphaera stadtmanae DSM 3091 [CP000102]
Start position on genome 445073
End posion on genome 445002
Amino Acid Val
Anticodon GAC
Upstream region at tRNA start position 
atatatttct
tRNA gene sequence 
GGGCCGGTGGTCTAGAGGTATGATACCTCCTTGACGTGGAGGGGATCACGAGTTCGAATC
TCGTTCGGCCCAtat
Downstream region at tRNA end position 
taaattctaa
Secondary structure (Cloverleaf model)
>At1581	Val	GAC
                   t      Atat taaattctaa
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C
                     G + T          T A
                    T     T G C T C     A
        G A        G      | | | | |     G
      A     T C T G       A C G A G     C
      G       | | +                 T T
      G     T G A T
        T A        A     GGATC
                    C - G
                    C - G
                    T - A
                    C - G
                    C - G
                  T       T
                  T       G
                    G A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTGGTCTAGAGGTATGATACCTCCTTGACGTGGAGGGGATCACGAGTTCGAATC
TCGTTCGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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