The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1585
Genome IDCP000102
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosphaera stadtmanae DSM 3091 [CP000102]
Start position on genome 1403944
End posion on genome 1403871
Amino Acid Ala
Anticodon GGC
Upstream region at tRNA start position 
tttttttaaa
tRNA gene sequence 
GGGCTAGTAGCTCAGCTTGGTAGAGTGTCGCCTTGGCATGGCGGAGGCCTCGGGTTCAAC
TCCCGACTAGTCCAttt
Downstream region at tRNA end position 
ttaatgtttt
Secondary structure (Cloverleaf model)
>At1585	Ala	GGC
                   a      Attt ttaatgtttt
                     G - C
                     G - C
                     G + T
                     C - G
                     T - A
                     A - T
                     G - C          T C
                    T     A G C C C     A
      C G A        A      | | | | |     A
    T       C T C G       T C G G G     C
    T       | | | +                 T T
    G       G A G T
      G T A        G     AGGCC
                    T + G
                    C - G
                    G - C
                    C - G
                    C - G
                  T       T
                  T       A
                    G G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTAGTAGCTCAGCTTGGTAGAGTGTCGCCTTGGCATGGCGGAGGCCTCGGGTTCAAC
TCCCGACTAGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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