The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1586
Genome IDCP000102
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosphaera stadtmanae DSM 3091 [CP000102]
Start position on genome 1534991
End posion on genome 1534908
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
ttttttagag
tRNA gene sequence 
GCCGAGATAGCCTAGCCAGGTAAGGCGCGGGACTTGAGATCCCGTGGAGTTATCTCCTCA
TGGGTTCAAATCCCATTCTCGGCGtaa
Downstream region at tRNA end position 
actttatttt
Secondary structure (Cloverleaf model)
>At1586	Ser	TGA
                   g      Gtaa actttatttt
                     G - C
                     C - G
                     C - G
                     G - C
                     A - T
                     G - C
                     A - T          T A
                    T     T A C C C     A
      C G A        A      | | | | |     A
    C       T C C G       A T G G G     C
    A       | | | |                 T T
    G       A G G C
      G T A        G     TGGAGTTATCTCCTC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGAGATAGCCTAGCCAGGTAAGGCGCGGGACTTGAGATCCCGTGGAGTTATCTCCTCA
TGGGTTCAAATCCCATTCTCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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