The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1589
Genome IDCP000102
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosphaera stadtmanae DSM 3091 [CP000102]
Start position on genome 1550602
End posion on genome 1550529
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
cactgttata
tRNA gene sequence 
CCCGTCTTAGCTCAATTTGGCAGAGCATCGGACTGTAGATCCGAATGTTGCTGGTTCAAG
TCCGGCAGACGGGAtaa
Downstream region at tRNA end position 
ccttttattt
Secondary structure (Cloverleaf model)
>At1589	Tyr	GTA
                   a      Ataa ccttttattt
                     C - G
                     C - G
                     C - G
                     G - C
                     T - A
                     C - G
                     T - A          T G
                    T     C G G C C     A
      T A A        A      | | + | |     A
    T       C T C G       G C T G G     C
    T       | | | |                 T T
    G       G A G C
      G C A        A     ATGTT
                    T - A
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G T A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
CCCGTCTTAGCTCAATTTGGCAGAGCATCGGACTGTAGATCCGAATGTTGCTGGTTCAAG
TCCGGCAGACGGGA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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