The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1590
Genome IDCP000102
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosphaera stadtmanae DSM 3091 [CP000102]
Start position on genome 1550685
End posion on genome 1550611
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
tttagtacat
tRNA gene sequence 
GGGACCATAGGGTAGCTTGGTCGATCCTTTGGGCTTTGGGAGCCTGAGACTCCGGTTCAA
ATCCGGGTGGTCCCActg
Downstream region at tRNA end position 
ttatacccgt
Secondary structure (Cloverleaf model)
>At1590	Pro	TGG
                   t      Actg ttatacccgt
                     G - C
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     A - T          T A
                    T     G G G C C     A
    T C G A        A      + | | | |     A
  T         T G G G       T C C G G     C
  G           | | +                 T T
  G         T C C T
    T C G A        T     AGAC
                    T + G
                    G + T
                    G - C
                    G - C
                    C - G
                  T       A
                  T       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGACCATAGGGTAGCTTGGTCGATCCTTTGGGCTTTGGGAGCCTGAGACTCCGGTTCAA
ATCCGGGTGGTCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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