The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1593
Genome IDCP000102
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosphaera stadtmanae DSM 3091 [CP000102]
Start position on genome 1703847
End posion on genome 1703773
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position 
tattatatat
tRNA gene sequence 
GGGTTTGTAGCCTAGTCTGGATAGGGCACCAGACTCCTAATCTGGAGACCGAGGGTTCAA
ATCCCTCCAAATCCGtat
Downstream region at tRNA end position 
ttatttttca
Secondary structure (Cloverleaf model)
>At1593	Arg	CCT
                   t      Gtat ttatttttca
                     G - C
                     G - C
                     G + T
                     T - A
                     T - A
                     T - A
                     G - C          T A
                    T     C T C C C     A
    C T G A        A      | | | | |     A
  T         T C C G       G A G G G     C
  G         + | | |                 T T
  G         G G G C
    A T A          A     AGACC
                    C - G
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       A
                    C C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGTTTGTAGCCTAGTCTGGATAGGGCACCAGACTCCTAATCTGGAGACCGAGGGTTCAA
ATCCCTCCAAATCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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