The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1595
Genome IDCP000254
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanospirillum hungatei JF-1 [CP000254]
Start position on genome 41348
End posion on genome 41420
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position
tggaatcaga
tRNA gene sequence
GGGCTCGTAGCTCAGCTGGAAGAGCGCGGCGTTTGCAACGCCGAGGCCTGGGGTTCAAAT
CCCCACGGGTCCActg
Downstream region at tRNA end position
gtatttttcg
Secondary structure (Cloverleaf model)
>At1595	Ala	TGC
                   a      Actg gtatttttcg
                     G - C
                     G - C
                     G + T
                     C - G
                     T + G
                     C - G
                     G - C          T A
                    T     A C C C C     A
      C G A        A      | | | | |     A
    T       C T C G       T G G G G     C
    G       | | | |                 T T
    G       G A G C
      A A          G     AGGCC
                    C - G
                    G - C
                    G - C
                    C - G
                    G - C
                  T       A
                  T       A
                    T G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTCGTAGCTCAGCTGGAAGAGCGCGGCGTTTGCAACGCCGAGGCCTGGGGTTCAAAT
CCCCACGGGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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