The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1597
Genome IDCP000254
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanospirillum hungatei JF-1 [CP000254]
Start position on genome 412578
End posion on genome 412662
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
gtaataaggc
tRNA gene sequence 
GCGAGGGTACCAAAGCCTGGCCAAATGGGCCGGACTTAAGATCCGGTTTCGAAGGAATCC
AAGGGTTCAAATCCCTTCCCTCGCAtat
Downstream region at tRNA end position 
aaatttcatt
Secondary structure (Cloverleaf model)
>At1597	Leu	TAA
                   c      Atat aaatttcatt
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C          T A
                    T     T T C C C     A
    C C G A        A      | | | | |     A
  T         A A C C       A A G G G     C
  G           | | |                 T T
  G         A T G G
    C C A A        G     TTTCGAAGGAATCC
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGGGTACCAAAGCCTGGCCAAATGGGCCGGACTTAAGATCCGGTTTCGAAGGAATCC
AAGGGTTCAAATCCCTTCCCTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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