The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1600
Genome IDCP000254
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanospirillum hungatei JF-1 [CP000254]
Start position on genome 712615
End posion on genome 712687
Amino Acid Lys
Anticodon CTT
Upstream region at tRNA start position 
atggcacaac
tRNA gene sequence 
GGGTCTGTAGCTTAGTCGGTAGAGCGGCGGACTCTTAATCCGCAGGCCAGGGGTTCGAGT
CCCTTCAGGCCCGctc
Downstream region at tRNA end position 
gttgtttctt
Secondary structure (Cloverleaf model)
>At1600	Lys	CTT
                   c      Gctc gttgtttctt
                     G - C
                     G - C
                     G - C
                     T + G
                     C - G
                     T - A
                     G - C          T G
                    T     T T C C C     A
      T G A        A      | + | | |     G
    C       T T C G       A G G G G     C
    G       + | | |                 T T
    G       G A G C
      T A          G     AGGCC
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    C T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGTCTGTAGCTTAGTCGGTAGAGCGGCGGACTCTTAATCCGCAGGCCAGGGGTTCGAGT
CCCTTCAGGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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