The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1602
Genome IDCP000254
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanospirillum hungatei JF-1 [CP000254]
Start position on genome 778389
End posion on genome 778463
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
taatggcaca
tRNA gene sequence 
GCTGATATAGTGTAGTCCGGCCAATCATGTCGGCCTTTCACGCCGACGACTGGGGTTCGA
ATCCCCATATCAGCAtaa
Downstream region at tRNA end position 
actttttatt
Secondary structure (Cloverleaf model)
>At1602	Glu	TTC
                   a      Ataa actttttatt
                     G - C
                     C - G
                     T - A
                     G - C
                     A - T
                     T - A
                     A - T          T A
                    T     A C C C C     A
    C T G A        A      | | | | |     G
  C         T G T G       T G G G G     C
  G           | | +                 T T
  G         T C A T
    C C A A        G     CGAC
                    T - A
                    C - G
                    G - C
                    G - C
                    C - G
                  C       C
                  T       A
                    T T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTGATATAGTGTAGTCCGGCCAATCATGTCGGCCTTTCACGCCGACGACTGGGGTTCGA
ATCCCCATATCAGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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