The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1603
Genome IDCP000254
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanospirillum hungatei JF-1 [CP000254]
Start position on genome 960738
End posion on genome 960821
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
atgtataggt
tRNA gene sequence 
GCCGAGATAGTCTAGTCCGGGAAGGCGGTGGTCTTGAAAACCACTGGTGGTAACACCTCG
GGAGTTCAAATCTCCCTTTCGGCGtaa
Downstream region at tRNA end position 
aaattttttt
Secondary structure (Cloverleaf model)
>At1603	Ser	TGA
                   t      Gtaa aaattttttt
                     G - C
                     C - G
                     C - G
                     G - C
                     A - T
                     G + T
                     A - T          T A
                    T     C C C T C     A
      T G A        A      | | | | |     A
    C       T C T G       G G G A G     C
    C       | | + |                 T T
    G       A G G C
      G G A        G     TGGTGGTAACACCTC
                    G - C
                    T - A
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGAGATAGTCTAGTCCGGGAAGGCGGTGGTCTTGAAAACCACTGGTGGTAACACCTCG
GGAGTTCAAATCTCCCTTTCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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