The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1605
Genome IDCP000254
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanospirillum hungatei JF-1 [CP000254]
Start position on genome 1183225
End posion on genome 1183296
Amino Acid Ala
Anticodon GGC
Upstream region at tRNA start position 
ctaataaggc
tRNA gene sequence 
GGGCCGGTAGATCAGTGGGAGATCGCTACCTTGGCATGGTAGAGGCCGCGGGTTCAATTC
CCGCTCGGTCCAtca
Downstream region at tRNA end position 
gtttttacgt
Secondary structure (Cloverleaf model)
>At1605	Ala	GGC
                   c      Atca gtttttacgt
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     G + T          T T
                    T     C G C C C     A
        G A        A      | | | | |     A
      T     C T A G       G C G G G     C
      G     | | | |                 T T
      G     G A T C
        G A        G     AGGCC
                    C - G
                    T - A
                    A - T
                    C - G
                    C - G
                  T       T
                  T       A
                    G G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGATCAGTGGGAGATCGCTACCTTGGCATGGTAGAGGCCGCGGGTTCAATTC
CCGCTCGGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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