The detailed information of tRNA gene sequence
[Important Notice]
tRNA genes in Archaeal genomes were obtained from
"SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology,
"6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution,
"25, 2709-2716, 2008".
Sequence ID | >At1609 |
Genome ID | CP000254 |
Phylum/Class | Euryarchaeota |
Species | Methanospirillum hungatei JF-1 [CP000254] |
Start position on genome
|
1849204
|
End posion on genome
|
1849362
|
Amino Acid
|
Trp
|
Anticodon
|
CCA
|
Upstream region at tRNA start position
|
tatgagcaca
|
tRNA gene sequence
|
GGGGTCGTGGCCTAGTCCGGCATGGCGACGGGCTCCAGACCCGTCGATCGTGAGTTCAAA TCTCACCGACCCCAcct
|
Downstream region at tRNA end position
|
gttttcataa
|
Secondary structure (Cloverleaf model) | >At1609 Trp CCA
a Acct gttttcataa
G - C
G - C
G - C
G - C
T - A
C - G
G - C T A
T C A C T C A
T G A G | | | | | A
C T C C G G T G A G C
C | | | T T
G T G G C
G C A G CGATC
A - T
C - G
G - C
G - C
G - C
C A
T G *
C C A
|
tRNA gene sequence including intron sequence (Lowercase is intron sequence.) | GGGGTCGTGGCCTAGTCCGGCATGGCGACGGGCTCCAGcggtctttgcatccggtgcaga tgatgacaaatgggtcttctgatttggtgatgatccgttggagcactgatgcatatcgga gagACCCGTCGATCGTGAGTTCAAATCTCACCGACCCCA |
Intron | |
Final decision | ¡û |
Comments | The tRNA gene was obtained from SPLITSdb. |
Genome/Seq. Info. | [Ensembl] |
SPLITSdb | [SPLITSdb] |
Comment |
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Input Comment |
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