The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1610
Genome IDCP000254
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanospirillum hungatei JF-1 [CP000254]
Start position on genome 2448371
End posion on genome 2448442
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
tgtggtgatt
tRNA gene sequence 
GCCAAGATGGCGGAGCGGCCACGCGGCTGACTGCAGATCAGCTACACTCCGGTTCAAATC
CGGATCTTGGCTttt
Downstream region at tRNA end position 
ttccagttca
Secondary structure (Cloverleaf model)
>At1610	Cys	GCA
                   t      Tttt ttccagttca
                     G - C
                     C - G
                     C - G
                     A - T
                     A - T
                     G - C
                     A - T          T A
                    T     A G G C C     A
        G A        G      | | | | |     A
      C     G G C G       T C C G G     C
      G       | | |                 T T
      G     A C G C
        C C        G     TACAC
                    G - C
                    C - G
                    T - A
                    G - C
                    A - T
                  C       A
                  T       G
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCAAGATGGCGGAGCGGCCACGCGGCTGACTGCAGATCAGCTACACTCCGGTTCAAATC
CGGATCTTGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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