The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1611
Genome IDCP000254
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanospirillum hungatei JF-1 [CP000254]
Start position on genome 2522186
End posion on genome 2522257
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
aattctgagg
tRNA gene sequence 
GGATCCATAGGGTAGCGGATATCCTACCGGGCTTCGGACCCGGAGACGTGGGTTCGATTC
CCACTGGATCCGtct
Downstream region at tRNA end position 
cttttacaac
Secondary structure (Cloverleaf model)
>At1611	Arg	TCG
                   g      Gtct cttttacaac
                     G - C
                     G - C
                     A - T
                     T - A
                     C - G
                     C - G
                     A - T          T T
                    T     C A C C C     A
      C G A        A      | | | | |     G
    G       T G G G       G T G G G     C
    G         | | +                 T T
    A       T C C T
      T A          A     AGAC
                    C - G
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    T C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGATCCATAGGGTAGCGGATATCCTACCGGGCTTCGGACCCGGAGACGTGGGTTCGATTC
CCACTGGATCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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