The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1612
Genome IDCP000254
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanospirillum hungatei JF-1 [CP000254]
Start position on genome 2528326
End posion on genome 2528398
Amino Acid Gln
Anticodon CTG
Upstream region at tRNA start position 
taaaggcttc
tRNA gene sequence 
AGCCCGATAGTGTAGAGGTCAATCATACAAGGCTCTGGACCTTGTGACAGCAGTTCGAAT
CTGCTTCGGGCTAtca
Downstream region at tRNA end position 
tttttcaaaa
Secondary structure (Cloverleaf model)
>At1612	Gln	CTG
                   c      Atca tttttcaaaa
                     A - T
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     A - T          T A
                    T     T C G T C     A
      A G A        A      | | | | |     G
    G       T G T G       A G C A G     C
    G         | | +                 T T
    T       T C A T
      C A A        A     TGAC
                    C - G
                    A - T
                    A - T
                    G - C
                    G - C
                  C       A
                  T       G
                    C T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGCCCGATAGTGTAGAGGTCAATCATACAAGGCTCTGGACCTTGTGACAGCAGTTCGAAT
CTGCTTCGGGCTA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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