The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1613
Genome IDCP000254
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanospirillum hungatei JF-1 [CP000254]
Start position on genome 2532857
End posion on genome 2532940
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
tcttttattt
tRNA gene sequence 
GCTGAGGTAGTCTAGTCTGGGAAGGCGCAAGATTGGAAATCTTGTGGGAGCAATCCCTCG
GGAGTTCAAATCTCCCCCTTAGCGtaa
Downstream region at tRNA end position 
atttctttta
Secondary structure (Cloverleaf model)
>At1613	Ser	GGA
                   t      Gtaa atttctttta
                     G - C
                     C - G
                     T - A
                     G + T
                     A - T
                     G - C
                     G - C          T A
                    T     C C C T C     A
      T G A        A      | | | | |     A
    C       T C T G       G G G A G     C
    T       | | + |                 T T
    G       A G G C
      G G A        G     TGGGAGCAATCCCTC
                    C - G
                    A - T
                    A - T
                    G - C
                    A - T
                  T       A
                  T       A
                    G G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTGAGGTAGTCTAGTCTGGGAAGGCGCAAGATTGGAAATCTTGTGGGAGCAATCCCTCG
GGAGTTCAAATCTCCCCCTTAGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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