The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1618
Genome IDCP000254
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanospirillum hungatei JF-1 [CP000254]
Start position on genome 2791979
End posion on genome 2792051
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
ttgttcccgc
tRNA gene sequence 
GCCTCAGTGGCTTAGCTGGCAGAGCGGTTGACTTGTAATCAACAGGTCCCGAGTTCAAAT
CTCGGCTGAGGCTtcc
Downstream region at tRNA end position 
cttttattga
Secondary structure (Cloverleaf model)
>At1618	Thr	TGT
                   c      Ttcc cttttattga
                     G - C
                     C - G
                     C - G
                     T - A
                     C - G
                     A - T
                     G - C          T A
                    T     G G C T C     A
      C G A        G      | | | | |     A
    T       T T C G       C C G A G     C
    G       + | | |                 T T
    G       G A G C
      C A          G     AGGTC
                    G - C
                    T - A
                    T - A
                    G - C
                    A - T
                  C       A
                  T       A
                    T G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCTCAGTGGCTTAGCTGGCAGAGCGGTTGACTTGTAATCAACAGGTCCCGAGTTCAAAT
CTCGGCTGAGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK