The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1623
Genome IDCP000254
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanospirillum hungatei JF-1 [CP000254]
Start position on genome 139800
End posion on genome 139729
Amino Acid Arg
Anticodon GCG
Upstream region at tRNA start position 
ggcacttctg
tRNA gene sequence 
GTCCCGGTAGGGTAGTGGATATCCTAGAAGCCTGCGGAGCTTTTGACCTGGGTTCAAGTC
CCAGCCGGGACGtca
Downstream region at tRNA end position 
gagcgattaa
Secondary structure (Cloverleaf model)
>At1623	Arg	GCG
                   g      Gtca gagcgattaa
                     G - C
                     T - A
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T G
                    T     G A C C C     A
      T G A        A      | | | | |     A
    G       T G G G       C T G G G     C
    G         | | +                 T T
    A       T C C T
      T A          A     TGAC
                    G + T
                    A - T
                    A - T
                    G - C
                    C - G
                  C       A
                  T       G
                    G C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GTCCCGGTAGGGTAGTGGATATCCTAGAAGCCTGCGGAGCTTTTGACCTGGGTTCAAGTC
CCAGCCGGGACG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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