The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1624
Genome IDCP000254
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanospirillum hungatei JF-1 [CP000254]
Start position on genome 677338
End posion on genome 677254
Amino Acid Leu
Anticodon CAG
Upstream region at tRNA start position 
cttttattaa
tRNA gene sequence 
GCGAGGATCGCCGAGCCAGGTCAAAGGCGTTAGGTTCAGGGCCTAATCCCGTAGGGGTTC
GCCGGTTCAAATCCGGCTCCTCGCAtta
Downstream region at tRNA end position 
aattttaaaa
Secondary structure (Cloverleaf model)
>At1624	Leu	CAG
                   a      Atta aattttaaaa
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C
                     A - T          T A
                    T     C G G C C     A
    C C G A        C      | | | | |     A
  A         G C C G       G C C G G     C
  G           | | |                 T T
  G         A G G C
    T C A A        G     TCCCGTAGGGGTTC
                    T - A
                    T - A
                    A - T
                    G - C
                    G - C
                  T       G
                  T       G
                    C A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGGATCGCCGAGCCAGGTCAAAGGCGTTAGGTTCAGGGCCTAATCCCGTAGGGGTTC
GCCGGTTCAAATCCGGCTCCTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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