The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1625
Genome IDCP000254
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanospirillum hungatei JF-1 [CP000254]
Start position on genome 722724
End posion on genome 722650
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position 
taataaggca
tRNA gene sequence 
GGACGTGTGGCCTAGTCAGGATATGGCGTCAGCCTCCTAAGCTGAATGCCGGGGGTTCAA
ATCCCTCCACGTCCGtac
Downstream region at tRNA end position 
ccttttttga
Secondary structure (Cloverleaf model)
>At1625	Arg	CCT
                   a      Gtac ccttttttga
                     G - C
                     G - C
                     A - T
                     C - G
                     G - C
                     T - A
                     G - C          T A
                    T     C T C C C     A
    C T G A        G      | + | | |     A
  A         T C C G       G G G G G     C
  G           | | |                 T T
  G         T G G C
    A T A          G     ATGCC
                    T - A
                    C - G
                    A - T
                    G - C
                    C - G
                  C       A
                  T       A
                    C C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGACGTGTGGCCTAGTCAGGATATGGCGTCAGCCTCCTAAGCTGAATGCCGGGGGTTCAA
ATCCCTCCACGTCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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