The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1626
Genome IDCP000254
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanospirillum hungatei JF-1 [CP000254]
Start position on genome 893256
End posion on genome 893186
Amino Acid Gly
Anticodon CCC
Upstream region at tRNA start position 
tggtgcacct
tRNA gene sequence 
GCGGTAATAGTCTAGCGGCAGGACAGGGGCTTCCCAAGCCCTTAGCCCGGGTTCGATCCC
CGGTTACCGCAtta
Downstream region at tRNA end position 
ttttataatt
Secondary structure (Cloverleaf model)
>At1626	Gly	CCC
                   t      Atta ttttataatt
                     G - C
                     C - G
                     G - C
                     G - C
                     T - A
                     A - T
                     A - T          C T
                    T     G G C C C     A
        G A        A      | | | | |     G
      C     T C T G       C C G G G     C
      G     + | | |                 T T
      G     G G A C
        C A        A     TAGC
                    G + T
                    G - C
                    G - C
                    G - C
                    C - G
                  T       A
                  T       A
                    C C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGTAATAGTCTAGCGGCAGGACAGGGGCTTCCCAAGCCCTTAGCCCGGGTTCGATCCC
CGGTTACCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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