The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1628
Genome IDCP000254
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanospirillum hungatei JF-1 [CP000254]
Start position on genome 1184126
End posion on genome 1184052
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
tgtcccgcac
tRNA gene sequence 
GGGGTAATAGGGTAGCCTGGTCCATCCTAGAGCGTTTGGGACGCTTTGACCGCAGTTCAA
ATCTGCGTTACCCCAtct
Downstream region at tRNA end position 
tcttttatga
Secondary structure (Cloverleaf model)
>At1628	Pro	TGG
                   c      Atct tcttttatga
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     A - T
                     A - T          T A
                    T     G C G T C     A
    C C G A        A      | | | | |     A
  T         T G G G       C G C A G     C
  G           | | +                 T T
  G         T C C T
    T C C A        A     TGAC
                    G + T
                    A - T
                    G - C
                    C - G
                    G - C
                  T       A
                  T       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGTAATAGGGTAGCCTGGTCCATCCTAGAGCGTTTGGGACGCTTTGACCGCAGTTCAA
ATCTGCGTTACCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK