The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1630
Genome IDCP000254
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanospirillum hungatei JF-1 [CP000254]
Start position on genome 1838747
End posion on genome 1838675
Amino Acid Pro
Anticodon GGG
Upstream region at tRNA start position 
agtatggaac
tRNA gene sequence 
GGGGCCATAGGGTAGCCTGGCATCCTAGGAGACTGGGGGTCTTCTGACTCGAGTTCGAAT
CTCGATGGCCCCAttt
Downstream region at tRNA end position 
tgtttttcgg
Secondary structure (Cloverleaf model)
>At1630	Pro	GGG
                   c      Attt tgtttttcgg
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     A - T          T A
                    T     A G C T C     A
      C G A        A      | | | | |     G
    C       T G G G       T C G A G     C
    T       | + | |                 T T
    G       A T C C
      G C          T     CTGAC
                    A - T
                    G + T
                    G - C
                    A - T
                    G   G
                  A       G
                  C       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCATAGGGTAGCCTGGCATCCTAGGAGACTGGGGGTCTTCTGACTCGAGTTCGAAT
CTCGATGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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