The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1631
Genome IDCP000254
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanospirillum hungatei JF-1 [CP000254]
Start position on genome 2448014
End posion on genome 2447941
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
gtcttctgat
tRNA gene sequence 
GCCGGTGTGGCAGAGTGGCTGAATGCCTTCGCCTGCAAAGCGAATGTTTGGGGGTTCGAT
TCCCTCCGCCGGCGttt
Downstream region at tRNA end position 
ctgctgggtg
Secondary structure (Cloverleaf model)
>At1631	Cys	GCA
                   t      Gttt ctgctgggtg
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     T + G
                     G - C          T T
                    T     C T C C C     A
      T G A        G      | + | | |     G
    G       G A C G       G G G G G     C
    G         | | |                 T T
    C       A T G C
      T G A        C     TGTTT
                    T - A
                    T - A
                    C - G
                    G - C
                    C - G
                  C       A
                  T       A
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGTGTGGCAGAGTGGCTGAATGCCTTCGCCTGCAAAGCGAATGTTTGGGGGTTCGAT
TCCCTCCGCCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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