The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1633
Genome IDCP000254
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanospirillum hungatei JF-1 [CP000254]
Start position on genome 2694737
End posion on genome 2694655
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position 
ttcttattgt
tRNA gene sequence 
GCGGGGATAGCCAAGTGGTCAAAGGCGAACGCCTCAAGAGCGTTTCTCGTAGGAGTTCAG
GGGTTCGACTCCCTTTCCCCGCAtat
Downstream region at tRNA end position 
acctctttct
Secondary structure (Cloverleaf model)
>At1633	Leu	CAA
                   t      Atat acctctttct
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     A - T          T C
                    T     T T C C C     A
      T G A        A      | + | | |     G
    G       A C C G       A G G G G     C
    G         | | |                 T T
    T       A G G C
      C A A        G     TCTCGTAGGAGTTC
                    A - T
                    A - T
                    C - G
                    G - C
                    C - G
                  C       A
                  T       G
                    C A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGATAGCCAAGTGGTCAAAGGCGAACGCCTCAAGAGCGTTTCTCGTAGGAGTTCAG
GGGTTCGACTCCCTTTCCCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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