The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1634
Genome IDCP000254
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanospirillum hungatei JF-1 [CP000254]
Start position on genome 2753937
End posion on genome 2753866
Amino Acid Ala
Anticodon CGC
Upstream region at tRNA start position 
tctccatttc
tRNA gene sequence 
GGGCTCGTAGATCAGTGGGAGATCGCTGTGTTCGCAACGCAGAGGCCGCGGGTTCAAATC
CCGCCGGGTCCAttt
Downstream region at tRNA end position 
ttttgataat
Secondary structure (Cloverleaf model)
>At1634	Ala	CGC
                   c      Attt ttttgataat
                     G - C
                     G - C
                     G + T
                     C - G
                     T + G
                     C - G
                     G - C          T A
                    T     C G C C C     A
        G A        A      | | | | |     A
      T     C T A G       G C G G G     C
      G     | | | |                 T T
      G     G A T C
        G A        G     AGGCC
                    C - G
                    T - A
                    G - C
                    T + G
                    G - C
                  T       A
                  T       A
                    C G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTCGTAGATCAGTGGGAGATCGCTGTGTTCGCAACGCAGAGGCCGCGGGTTCAAATC
CCGCCGGGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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