The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1636
Genome IDCP000254
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanospirillum hungatei JF-1 [CP000254]
Start position on genome 2881740
End posion on genome 2881668
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position
gatatgccca
tRNA gene sequence
GCCCAGATAGTGTAGTGGCCTATCATGTCGGCCTGTCACGCCGACGACTCGGATTCGAAT
TCCGATCTGGGCGtct
Downstream region at tRNA end position
tctttttccg
Secondary structure (Cloverleaf model)
>At1636	Asp	GTC
                   a      Gtct tctttttccg
                     G - C
                     C - G
                     C - G
                     C - G
                     A - T
                     G - C
                     A - T          T A
                    T     A G C C T     A
      T G A        A      | | | | |     G
    G       T G T G       T C G G A     C
    G         | | +                 T T
    C       T C A T
      C T A        G     CGAC
                    T - A
                    C - G
                    G - C
                    G - C
                    C - G
                  C       C
                  T       A
                    G T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCAGATAGTGTAGTGGCCTATCATGTCGGCCTGTCACGCCGACGACTCGGATTCGAAT
TCCGATCTGGGCG
Intron
Final decision
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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