The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1637
Genome IDCP000254
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanospirillum hungatei JF-1 [CP000254]
Start position on genome 2881854
End posion on genome 2881749
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position
agagcacaat
tRNA gene sequence
CCCGCCTTAACTCAGACTGGTAGAGTGCGCGGCTGTAGACCGCGATGTCCCCGGTTCAAA
TCCGGGAGGCGGGAtat
Downstream region at tRNA end position
gcccagccca
Secondary structure (Cloverleaf model)
>At1637	Tyr	GTA
                   t      Atat gcccagccca
                     C - G
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     T - A          T A
                    T     G G G C C     A
      A G A        A      | | | | |     A
    C       C T C A       C C C G G     C
    T       | | | |                 T T
    G       G A G T
      G T A        G     ATGTC
                    C - G
                    G - C
                    C - G
                    G - C
                    G - C
                  C       A
                  T       G *
                    G T A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
CCCGCCTTAACTCAGACTGGTAGAGTGCGCGGCTGTAGactgatttgccgtttgaggcaa
gagcgcagctACCGCGATGTCCCCGGTTCAAATCCGGGAGGCGGGA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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