The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1639
Genome IDCP000254
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanospirillum hungatei JF-1 [CP000254]
Start position on genome 3100268
End posion on genome 3100195
Amino Acid Phe
Anticodon GAA
Upstream region at tRNA start position 
gtatagtcgc
tRNA gene sequence 
GCCTCAGTAGCTCAGACTGGGAGAGCGCCAGACTGAAGATCTGGTTGTCCCCGGTTCAAA
TCCGGGCTGAGGCAtag
Downstream region at tRNA end position 
ataccaaagt
Secondary structure (Cloverleaf model)
>At1639	Phe	GAA
                   c      Atag ataccaaagt
                     G - C
                     C - G
                     C - G
                     T - A
                     C - G
                     A - T
                     G - C          T A
                    T     G G G C C     A
      A G A        A      | | | | |     A
    C       C T C G       C C C G G     C
    T       | | | |                 T T
    G       G A G C
      G G A        G     TTGTC
                    C - G
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       G
                    G A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCTCAGTAGCTCAGACTGGGAGAGCGCCAGACTGAAGATCTGGTTGTCCCCGGTTCAAA
TCCGGGCTGAGGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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