The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1642
Genome IDCP000254
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanospirillum hungatei JF-1 [CP000254]
Start position on genome 3176723
End posion on genome 3176649
Amino Acid Pro
Anticodon CGG
Upstream region at tRNA start position 
ataccaatga
tRNA gene sequence 
GGGGTCGTAGGGTAGCCTGGACCATCCTAGGGCGTTCGGGACGCTCTGACCTGAGTTCGA
ATCTCAGCGACCCCAttc
Downstream region at tRNA end position 
ttgtgccaac
Secondary structure (Cloverleaf model)
>At1642	Pro	CGG
                   a      Attc ttgtgccaac
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     C - G
                     G - C          T A
                    T     G A C T C     A
    C C G A        A      | | | | |     G
  T         T G G G       C T G A G     C
  G           | | +                 T T
  G         T C C T
    A C C A        A     TGAC
                    G - C
                    G + T
                    G - C
                    C - G
                    G - C
                  T       A
                  T       G
                    C G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGTCGTAGGGTAGCCTGGACCATCCTAGGGCGTTCGGGACGCTCTGACCTGAGTTCGA
ATCTCAGCGACCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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