The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1648
Genome IDAE000666
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothermobacter thermautotrophicus str. Delta H [AE000666]
Start position on genome 568080
End posion on genome 568163
Amino Acid Leu
Anticodon GAG
Upstream region at tRNA start position 
attttcccat
tRNA gene sequence 
GCAGGGGTGGTCGAGCGGTCAAAGGCGCTAGGTTGAGGGCCTAGTGGGGGAGTCCCTTCG
CGGGTTCGAATCCCGTCCCCTGCActt
Downstream region at tRNA end position 
ctatttcatc
Secondary structure (Cloverleaf model)
>At1648	Leu	GAG
                   t      Actt ctatttcatc
                     G - C
                     C - G
                     A - T
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     T G C C C     A
      C G A        G      + | | | |     G
    G       G C T G       G C G G G     C
    G         | + |                 T T
    T       A G G C
      C A A        G     TGGGGGAGTCCCTTC
                    C - G
                    T - A
                    A - T
                    G - C
                    G - C
                  T       G
                  T       G
                    G A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCAGGGGTGGTCGAGCGGTCAAAGGCGCTAGGTTGAGGGCCTAGTGGGGGAGTCCCTTCG
CGGGTTCGAATCCCGTCCCCTGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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